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LOC105372049 uncharacterized LOC105372049 [ Homo sapiens (human) ]

Gene ID: 105372049, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372049
Gene description
uncharacterized LOC105372049
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372049 in Genome Data Viewer
Location:
18q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (31228112..31262297)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (31418712..31452987)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904377 Neighboring gene desmocollin 2 Neighboring gene DSC1/DSC2 antisense RNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:28746843-28747342 Neighboring gene desmocollin 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:28786090-28787289 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:28805437-28806008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13196 Neighboring gene uncharacterized LOC124904346 Neighboring gene NANOG hESC enhancer GRCh37_chr18:28881307-28881808 Neighboring gene NANOG hESC enhancer GRCh37_chr18:28909706-28910228 Neighboring gene desmoglein 1 Neighboring gene RNA, U6 small nuclear 167, pseudogene Neighboring gene DSG1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    31228112..31262297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753388.2 RNA Sequence

  2. XR_935334.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    31418712..31452987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088581.1 RNA Sequence

  2. XR_007088580.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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