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LOC105372047 uncharacterized LOC105372047 [ Homo sapiens (human) ]

Gene ID: 105372047, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105372047
Gene description
uncharacterized LOC105372047
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372047 in Genome Data Viewer
Location:
18q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (30325739..30386859, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (30514947..30576759, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904344 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:27755683-27755874 Neighboring gene MPRA-validated peak3089 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:27868886-27869471 Neighboring gene uncharacterized LOC105372046 Neighboring gene microRNA 302f Neighboring gene MPRA-validated peak3090 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:28192518-28193108 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:28211486-28212210 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:28212211-28212933 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:28343574-28344560 Neighboring gene NANOG hESC enhancer GRCh37_chr18:28395882-28396383 Neighboring gene MPRA-validated peak3091 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr18:28565824-28566020 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:28577152-28577726 Neighboring gene RNA, U6 small nuclear 857, pseudogene Neighboring gene uncharacterized LOC124904345 Neighboring gene desmocollin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    30325739..30386859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935332.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    30514947..30576759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088623.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials