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LOC105372017 uncharacterized LOC105372017 [ Homo sapiens (human) ]

Gene ID: 105372017, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372017
Gene description
uncharacterized LOC105372017
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372017 in Genome Data Viewer
Location:
18q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (22215899..22236354)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (22400944..22422700)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:19747195-19747698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:19750920-19751805 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:19751806-19752690 Neighboring gene GATA6 antisense RNA 1 (head to head) Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:19758263-19758888 Neighboring gene GATA binding protein 6 Neighboring gene RNA, U6 small nuclear 702, pseudogene Neighboring gene VISTA enhancer hs502 Neighboring gene NANOG hESC enhancer GRCh37_chr18:19795797-19796446 Neighboring gene NANOG hESC enhancer GRCh37_chr18:19798242-19798849 Neighboring gene uncharacterized LOC105372018 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC101927548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:19903753-19904708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    22215899..22236354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935279.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    22400944..22422700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088236.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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