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LOC105371356 uncharacterized LOC105371356 [ Homo sapiens (human) ]

Gene ID: 105371356, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105371356
Gene description
uncharacterized LOC105371356
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371356 in Genome Data Viewer
Location:
16q23.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (79675961..79725085)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (85732338..85795183)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene MAF bZIP transcription factor Neighboring gene uncharacterized LOC124903729 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:79561711-79561812 Neighboring gene Sharpr-MPRA regulatory region 6091 Neighboring gene uncharacterized LOC101928230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11159 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:79742031-79742530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11160 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:79804516-79804714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11161 Neighboring gene MAF transcriptional regulator RNA Neighboring gene long intergenic non-protein coding RNA 1229 Neighboring gene long intergenic non-protein coding RNA 1228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11164 Neighboring gene HNF4 motif-containing MPRA enhancer 204/205 Neighboring gene Sharpr-MPRA regulatory region 4834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11165 Neighboring gene NFE2L2 motif-containing MPRA enhancer 24 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:80006081-80006287 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:80060683-80061882 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:80078510-80079709 Neighboring gene uncharacterized LOC105371357 Neighboring gene uncharacterized LOC105371358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7739

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    79675961..79725085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752268.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    85732338..85795183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086546.1 RNA Sequence

  2. XR_007086545.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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