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LOC105371271 uncharacterized LOC105371271 [ Homo sapiens (human) ]

Gene ID: 105371271, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371271
Gene description
uncharacterized LOC105371271
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371271 in Genome Data Viewer
Location:
16q12.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (54048147..54072537)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (59846158..59870546)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903691 Neighboring gene FTO alpha-ketoglutarate dependent dioxygenase Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:53861530-53862207 Neighboring gene Sharpr-MPRA regulatory region 10092 Neighboring gene VISTA enhancer hs155 Neighboring gene Sharpr-MPRA regulatory region 7594 Neighboring gene VISTA enhancer hs157 Neighboring gene VISTA enhancer hs156 Neighboring gene Sharpr-MPRA regulatory region 2551 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:54082723-54083657 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:54083658-54084591 Neighboring gene FTO intronic transcript 1 Neighboring gene VISTA enhancer hs52 Neighboring gene Sharpr-MPRA regulatory region 5065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54228087-54228979 Neighboring gene Sharpr-MPRA regulatory region 10961 Neighboring gene long intergenic non-protein coding RNA 2169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54318795-54319714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54319715-54320634 Neighboring gene iroquois homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    54048147..54072537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933590.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    59846158..59870546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086367.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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