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LOC105371082 uncharacterized LOC105371082 [ Homo sapiens (human) ]

Gene ID: 105371082, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371082
Gene description
uncharacterized LOC105371082
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371082 in Genome Data Viewer
Location:
16p13.13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (11249601..11395790)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (11285859..11432106)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11304646-11305240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10422 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10423 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10424 Neighboring gene CRISPRi-validated cis-regulatory element chr16.1224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10425 Neighboring gene Sharpr-MPRA regulatory region 4189 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:11344039-11344246 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7197 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7198 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7199 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7200 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7201 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10428 Neighboring gene heterogeneous nuclear ribonucleoprotein C pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11359883-11360383 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11365871-11366567 Neighboring gene uncharacterized LOC124900380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11380465-11380965 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11379964-11380464 Neighboring gene small nucleolar RNA U13 Neighboring gene suppressor of cytokine signaling 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11391651-11392334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10431 Neighboring gene Sharpr-MPRA regulatory region 10157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10432 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11408487-11409184 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11409185-11409882 Neighboring gene transition protein 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11409883-11410580 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11414774-11415369 Neighboring gene protamine 3 Neighboring gene protamine 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10435 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10437 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:11422541-11423320 Neighboring gene protamine 1 Neighboring gene microRNA 548h-2 Neighboring gene uncharacterized LOC105371083 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7202 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7203 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:11448108-11448960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10438 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11464582-11465082 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10441 Neighboring gene mitochondrial ribosomal protein L18 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11480804-11481686 Neighboring gene putative uncharacterized protein LOC400499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11483724-11484478 Neighboring gene RecQ mediated genome instability 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11507777-11508748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11550335-11550854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11550855-11551372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10445 Neighboring gene uncharacterized LOC101927131 Neighboring gene uncharacterized LOC124903807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11564147-11564648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11588027-11589023 Neighboring gene Sharpr-MPRA regulatory region 8116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:11592015-11592563 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11595297-11596228 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11610059-11610587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11612139-11612638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11620432-11621366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11621367-11622300 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr16:11637410-11638225 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11654074-11654928 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:11656029-11656658 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11657289-11657918 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:11657919-11658546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11665841-11666778 Neighboring gene Sharpr-MPRA regulatory region 2706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10450 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7204 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7205 Neighboring gene lipopolysaccharide induced TNF factor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11688769-11689642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11689643-11690514 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11697089-11697681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:11699131-11699630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10451 Neighboring gene Sharpr-MPRA regulatory region 4417 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11708187-11708794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11708795-11709402 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11715855-11716623 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:11720940-11721474

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    11249601..11395790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933070.4 RNA Sequence

  2. XR_933073.3 RNA Sequence

  3. XR_933072.3 RNA Sequence

  4. XR_007064985.1 RNA Sequence

  5. XR_933071.3 RNA Sequence

  6. XR_933075.3 RNA Sequence

  7. XR_933074.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    11285859..11432106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086886.1 RNA Sequence

  2. XR_007086885.1 RNA Sequence

  3. XR_007086888.1 RNA Sequence

  4. XR_007086889.1 RNA Sequence

  5. XR_007086890.1 RNA Sequence

  6. XR_007086887.1 RNA Sequence

Nucleotide Protein
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