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LOC105370752 uncharacterized LOC105370752 [ Homo sapiens (human) ]

Gene ID: 105370752, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370752
Gene description
uncharacterized LOC105370752
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.6) and skin (RPKM 1.2) See more
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Genomic context

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See LOC105370752 in Genome Data Viewer
Location:
15q13.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (31026188..31037418)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (28820281..28831783)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31195700-31196697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31201877-31202376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31209335-31209834 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31214641-31215582 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31215583-31216523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31219875-31220375 Neighboring gene FANCD2 and FANCI associated nuclease 1 Neighboring gene myotubularin related protein 10 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31246205-31246731 Neighboring gene RNA, U6 small nuclear 466, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:31283406-31283928 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:31283929-31284450 Neighboring gene Sharpr-MPRA regulatory region 8183 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:31318084-31319283 Neighboring gene transient receptor potential cation channel subfamily M member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31369248-31369779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31370311-31370842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31370843-31371373 Neighboring gene microRNA 211 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31440177-31440810 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:31442413-31443612 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31451146-31451792 Neighboring gene uncharacterized LOC124903454 Neighboring gene long intergenic non-protein coding RNA 2352

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    31026188..31037418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932055.2 RNA Sequence

  2. XR_932056.2 RNA Sequence

  3. XR_007064555.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    3199496..3210996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_953307.2 RNA Sequence

  2. XR_953308.2 RNA Sequence

  3. XR_007068939.1 RNA Sequence

  4. XR_007068938.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    3311948..3323448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_952389.2 RNA Sequence

  2. XR_952390.2 RNA Sequence

  3. XR_007068788.1 RNA Sequence

  4. XR_007068787.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    28820281..28831783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085815.1 RNA Sequence

  2. XR_007085814.1 RNA Sequence

  3. XR_007085816.1 RNA Sequence

  4. XR_007085813.1 RNA Sequence

Nucleotide Protein
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