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LOC105370176 uncharacterized LOC105370176 [ Homo sapiens (human) ]

Gene ID: 105370176, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105370176
Gene description
uncharacterized LOC105370176
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370176 in Genome Data Viewer
Location:
13q14.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (41974839..42013878, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (41194095..41233426, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7635 Neighboring gene RNA, U6 small nuclear 74, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42518810-42519310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42519311-42519811 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:42533478-42533978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:42533979-42534479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7636 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5293 Neighboring gene lysyl-tRNA synthetase 1 pseudogene 1 Neighboring gene VWA8 antisense RNA 1 (head to head) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42575448-42575948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:42575949-42576449 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7637 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5296 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7638 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5297 Neighboring gene ribosomal protein S28 pseudogene 8 Neighboring gene Sharpr-MPRA regulatory region 14917 Neighboring gene diacylglycerol kinase eta Neighboring gene mitogen-activated protein kinase 6 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:42744005-42744636 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    41974839..42013878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_941905.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    41194095..41233426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084045.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials