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LINC02824 long intergenic non-protein coding RNA 2824 [ Homo sapiens (human) ]

Gene ID: 105370060, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02824provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2824provided by HGNC
Primary source
HGNC:HGNC:54356
See related
Ensembl:ENSG00000255998 AllianceGenome:HGNC:54356
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02824 in Genome Data Viewer
Location:
12q24.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126690416..126720330)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126698372..126727925)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (127174962..127204876)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6 Neighboring gene uncharacterized LOC100996671 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:127226104-127227303 Neighboring gene long intergenic non-protein coding RNA 944 Neighboring gene long intergenic non-protein coding RNA 943 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:127256382-127257581 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:127277009-127277172 Neighboring gene transmembrane protein 132B pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183614.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006065, AC069235
    Related
    ENST00000653913.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    126690416..126720330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    126698372..126727925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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