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LINC02463 long intergenic non-protein coding RNA 2463 [ Homo sapiens (human) ]

Gene ID: 105370004, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02463provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2463provided by HGNC
Primary source
HGNC:HGNC:53400
See related
AllianceGenome:HGNC:53400
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02463 in Genome Data Viewer
Location:
12q24.21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (115805983..115886270, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (115786990..115867226, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370003 Neighboring gene uncharacterized LOC105370002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116061414-116061930 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7 Neighboring gene Sharpr-MPRA regulatory region 9136 Neighboring gene RNA, 7SL, cytoplasmic 865, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr12:116237066-116237280 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:116247500-116248699 Neighboring gene small nucleolar RNA SNORD56 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:116308592-116309122 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116307287-116307787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116306786-116307286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:116309123-116309651 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:116329236-116329946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116399381-116399880 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:116435821-116436322 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:116436323-116436822 Neighboring gene mediator complex subunit 13L Neighboring gene RNA, U6 small nuclear 1188, pseudogene Neighboring gene Sharpr-MPRA regulatory region 5057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116569309-116569810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:116569811-116570310 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 12:116580291 Neighboring gene microRNA 620

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    115805983..115886270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749337.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    115786990..115867226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083101.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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