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LOC105369901 uncharacterized LOC105369901 [ Homo sapiens (human) ]

Gene ID: 105369901, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105369901
Gene description
uncharacterized LOC105369901
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105369901 in Genome Data Viewer
Location:
12q21.33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (91916294..91969377, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (91893804..91946861, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369896 Neighboring gene long intergenic non-protein coding RNA 2823 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:91774669-91775502 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:91775503-91776334 Neighboring gene Sharpr-MPRA regulatory region 7828 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:91799994-91801193 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:92172101-92173300 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:92197766-92198965 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:92296093-92297292 Neighboring gene long intergenic non-protein coding RNA 2404 Neighboring gene MPRA-validated peak1883 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr12:92356292-92356496 Neighboring gene NANOG hESC enhancer GRCh37_chr12:92415340-92415873 Neighboring gene long intergenic non-protein coding RNA 1619 Neighboring gene Sharpr-MPRA regulatory region 2068 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:92471461-92472660 Neighboring gene Sharpr-MPRA regulatory region 10753 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:92501486-92502024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6723 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:92538603-92539139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6725 Neighboring gene ribosomal protein L21 pseudogene 106 Neighboring gene BTG1 divergent transcript Neighboring gene BTG anti-proliferation factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    91916294..91969377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063580.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    91893804..91946861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083423.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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