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PDE2A-AS2 PDE2A antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105369378, updated on 22-Oct-2024

Summary

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Official Symbol
PDE2A-AS2provided by HGNC
Official Full Name
PDE2A antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40434
See related
Ensembl:ENSG00000256633 AllianceGenome:HGNC:40434
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 1.9), brain (RPKM 0.6) and 16 other tissues See more
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Genomic context

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See PDE2A-AS2 in Genome Data Viewer
Location:
11q13.4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (72584606..72588206)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (72511235..72514716)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit alpha 1 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr11:72273300-72273507 Neighboring gene long intergenic non-protein coding RNA 1537 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72295333-72295856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72295857-72296378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3721 Neighboring gene phosphodiesterase 2A Neighboring gene uncharacterized LOC105369377 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:72329425-72329944 Neighboring gene microRNA 139 Neighboring gene RNA, U7 small nuclear 105 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    72584606..72588206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001748291.2 RNA Sequence

    Related
    ENST00000545254.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    72511235..72514716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082288.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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