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LOC105369367 uncharacterized LOC105369367 [ Homo sapiens (human) ]

Gene ID: 105369367, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105369367
Gene description
uncharacterized LOC105369367
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.2) See more
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Genomic context

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See LOC105369367 in Genome Data Viewer
Location:
11q13.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (69228749..69234934, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (69245377..69251562, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (68996216..69002401, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC338694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68922957-68923884 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3692 Neighboring gene Sharpr-MPRA regulatory region 1080 Neighboring gene uncharacterized LOC105369366 Neighboring gene small integral membrane protein 38 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68963671-68964295 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68974538-68975038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68975039-68975539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68975921-68976422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:68976423-68976922 Neighboring gene uncharacterized LOC105369368 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5154 Neighboring gene VISTA enhancer hs2073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:69060193-69060744 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:69064594-69065793 Neighboring gene myeloma overexpressed

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188530.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP005140, AP005378

  2. NR_188531.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP005140, AP005378

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    69228749..69234934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187582.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    67112..67707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    69245377..69251562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials