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LOC104447801 transcription factor bHLH74 [ Eucalyptus grandis ]

Gene ID: 104447801, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104447801
Gene description
transcription factor bHLH74
Locus tag
EUGRSUZ_F00100
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104447801 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 6 NC_052617.1 (3498627..3502402, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092443.1 (1884300..1888078)

Chromosome 6 - NC_052617.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT6A Neighboring gene probable xyloglucan glycosyltransferase 12 Neighboring gene AP2-like ethylene-responsive transcription factor AIL1 Neighboring gene uncharacterized LOC104447798

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH74

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052617.1 Reference ASM1654582v1 Primary Assembly

    Range
    3498627..3502402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010061517.3 → XP_010059819.1  transcription factor bHLH74

    See identical proteins and their annotated locations for XP_010059819.1

    UniProtKB/TrEMBL
    A0A059BJ67
    Conserved Domains (1) summary
    smart00353
    Location:256 → 305
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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