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LOC104446166 transcription factor MYC1 [ Eucalyptus grandis ]

Gene ID: 104446166, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104446166
Gene description
transcription factor MYC1
Locus tag
EUGRSUZ_E01045
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104446166 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 11 NC_052622.1 (37863743..37865104)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092442.1 (11070074..11071625)

Chromosome 11 - NC_052622.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYC2 Neighboring gene transcription factor MYC2 Neighboring gene transcription factor bHLH14 Neighboring gene transcription factor MYC2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYC1
Names
transcription factor MYC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052622.1 Reference ASM1654582v1 Primary Assembly

    Range
    37863743..37865104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010060064.3 → XP_010058366.2  transcription factor MYC1

    UniProtKB/TrEMBL
    A0A059C317
    Conserved Domains (2) summary
    pfam14215
    Location:23 → 194
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cl00081
    Location:268 → 330
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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