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LOC104441435 homeobox protein knotted-1-like LET6 [ Eucalyptus grandis ]

Gene ID: 104441435, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104441435
Gene description
homeobox protein knotted-1-like LET6
Locus tag
EUGRSUZ_D01364
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104441435 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 4 NC_052615.1 (17661336..17668650, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092441.1 (24198784..24206189, complement)

Chromosome 4 - NC_052615.1Genomic Context describing neighboring genes Neighboring gene chromatin remodeling protein EBS Neighboring gene uncharacterized LOC120292775 Neighboring gene DEAD-box ATP-dependent RNA helicase 10 Neighboring gene translation initiation factor IF-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like LET6
Names
homeobox protein SBH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052615.1 Reference ASM1654582v1 Primary Assembly

    Range
    17661336..17668650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010054588.3 → XP_010052890.2  homeobox protein knotted-1-like LET6

    UniProtKB/TrEMBL
    A0A059CEY3
    Conserved Domains (4) summary
    pfam03789
    Location:259 → 280
    ELK; ELK domain
    pfam03790
    Location:121 → 159
    KNOX1; KNOX1 domain
    pfam03791
    Location:175 → 222
    KNOX2; KNOX2 domain
    pfam05920
    Location:299 → 338
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
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