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LOC104432591 transcription factor HY5-like [ Eucalyptus grandis ]

Gene ID: 104432591, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104432591
Gene description
transcription factor HY5-like
Locus tag
EUGRSUZ_B02198
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104432591 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (37770228..37773565, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092439.1 (43221096..43224128, complement)

Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 4 Neighboring gene transcription factor MYB61 Neighboring gene chromatin structure-remodeling complex protein BSH Neighboring gene uncharacterized LOC104432593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in red or far-red light signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to far red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HY5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

    Range
    37770228..37773565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010045052.3 → XP_010043354.2  transcription factor HY5-like

    UniProtKB/TrEMBL
    A0A059D589
    Conserved Domains (1) summary
    cd14704
    Location:113 → 164
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
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