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LOC104427821 transcription factor bHLH162 [ Eucalyptus grandis ]

Gene ID: 104427821, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104427821
Gene description
transcription factor bHLH162
Locus tag
EUGRSUZ_K02854
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104427821 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 11 NC_052622.1 (35703534..35705091)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092448.1 (36560890..36562642)

Chromosome 11 - NC_052622.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH162-like Neighboring gene uncharacterized LOC120289321 Neighboring gene transcription factor bHLH162 Neighboring gene RING-H2 finger protein ATL74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH162

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052622.1 Reference ASM1654582v1 Primary Assembly

    Range
    35703534..35705091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010040847.3 → XP_010039149.1  transcription factor bHLH162

    See identical proteins and their annotated locations for XP_010039149.1

    UniProtKB/TrEMBL
    A0A059A5A0, A0A059A6I7
    Conserved Domains (1) summary
    smart00353
    Location:18 → 70
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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