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LOC104425198 zinc finger protein CONSTANS-LIKE 9 [ Eucalyptus grandis ]

Gene ID: 104425198, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104425198
Gene description
zinc finger protein CONSTANS-LIKE 9
Locus tag
EUGRSUZ_K01387
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104425198 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 11 NC_052622.1 (18260481..18268299)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092448.1 (17006827..17014634)

Chromosome 11 - NC_052622.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104427347 Neighboring gene uncharacterized LOC104427349 Neighboring gene RRP15-like protein Neighboring gene probable E3 ubiquitin-protein ligase XERICO

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein CONSTANS-LIKE 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052622.1 Reference ASM1654582v1 Primary Assembly

    Range
    18260481..18268299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010037816.3 → XP_010036118.2  zinc finger protein CONSTANS-LIKE 9

    UniProtKB/TrEMBL
    A0A059A1F8
    Conserved Domains (2) summary
    cd19821
    Location:4 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:350 → 393
    CCT; CCT motif

  2. XM_039304812.1 → XP_039160746.1  zinc finger protein CONSTANS-LIKE 9

    UniProtKB/TrEMBL
    A0A059A1F8
    Conserved Domains (2) summary
    cd19821
    Location:4 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:350 → 393
    CCT; CCT motif

  3. XM_018865226.2 → XP_018720771.2  zinc finger protein CONSTANS-LIKE 9

    UniProtKB/TrEMBL
    A0A059A1F8
    Conserved Domains (2) summary
    cd19821
    Location:4 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:350 → 393
    CCT; CCT motif
Nucleotide Protein
Heading Accession and Version

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