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LOC104419901 agamous-like MADS-box protein AGL65 [ Eucalyptus grandis ]

Gene ID: 104419901, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104419901
Gene description
agamous-like MADS-box protein AGL65
Locus tag
EUGRSUZ_B00522
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104419901 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (6706124..6712454)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092439.1 (6861054..6867588)

Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML45 Neighboring gene putative lipoate-protein ligase A Neighboring gene chlorophyll a-b binding protein 4, chloroplastic Neighboring gene expansin-A15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL65

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

    Range
    6706124..6712454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039307287.1 → XP_039163221.1  agamous-like MADS-box protein AGL65

    UniProtKB/TrEMBL
    A0A059CYQ9
    Conserved Domains (1) summary
    smart00432
    Location:2 → 57
    MADS; MADS domain

  2. XM_010031733.3 → XP_010030035.2  agamous-like MADS-box protein AGL65

    UniProtKB/TrEMBL
    A0A059CYQ9
    Conserved Domains (1) summary
    smart00432
    Location:2 → 57
    MADS; MADS domain

  3. XM_039307286.1 → XP_039163220.1  agamous-like MADS-box protein AGL65

    UniProtKB/TrEMBL
    A0A059CYQ9
    Conserved Domains (1) summary
    smart00432
    Location:2 → 57
    MADS; MADS domain
Nucleotide Protein
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