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LOC104415106 zinc finger CCCH domain-containing protein 34 [ Eucalyptus grandis ]

Gene ID: 104415106, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104415106
Gene description
zinc finger CCCH domain-containing protein 34
Locus tag
EUGRSUZ_H03871
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104415106 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 8 NC_052619.1 (55273796..55290881, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092445.1 (56481893..56499372, complement)

Chromosome 8 - NC_052619.1Genomic Context describing neighboring genes Neighboring gene GTP-binding protein OBGC, chloroplastic Neighboring gene ethylene-responsive transcription factor ERF086 Neighboring gene uncharacterized LOC104415107 Neighboring gene transcription termination factor MTERF9, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 34
Names
zinc finger CCCH domain-containing protein 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052619.1 Reference ASM1654582v1 Primary Assembly

    Range
    55273796..55290881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018861362.2 → XP_018716907.2  zinc finger CCCH domain-containing protein 34 isoform X2

    UniProtKB/TrEMBL
    A0A059B4D7
    Conserved Domains (2) summary
    smart00356
    Location:412 → 436
    ZnF_C3H1; zinc finger
    pfam00642
    Location:158 → 183
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_018861358.2 → XP_018716903.2  zinc finger CCCH domain-containing protein 34 isoform X1

    Conserved Domains (2) summary
    smart00356
    Location:539 → 563
    ZnF_C3H1; zinc finger
    pfam00642
    Location:285 → 310
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
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