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WRKY74 probable WRKY transcription factor 11 [ Brassica rapa (field mustard) ]

Gene ID: 103851754, updated on 7-Dec-2023

Summary

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Gene symbol
WRKY74
Gene description
probable WRKY transcription factor 11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See WRKY74 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
3
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (3053381..3055069)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (2951561..2953175)

Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103851744 Neighboring gene uncharacterized LOC108871100 Neighboring gene exocyst complex component EXO70A1 Neighboring gene cytochrome P450 71B2 Neighboring gene uncharacterized LOC117128200

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis). Tang J, et al. BMC Plant Biol, 2013 Nov 25. PMID 24267479, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 11
Names
WRKY transcription factor 74

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302053.1 → NP_001288982.1  probable WRKY transcription factor 11

    See identical proteins and their annotated locations for NP_001288982.1

    Status: PROVISIONAL

    Source sequence(s)
    KF430079
    UniProtKB/TrEMBL
    A0A3P5ZDB7, M4D478, V5REP4
    Conserved Domains (2) summary
    pfam03106
    Location:246 → 302
    WRKY; WRKY DNA -binding domain
    pfam10533
    Location:211 → 242
    Plant_zn_clust; Plant zinc cluster domain

RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    3053381..3055069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009128630.3 → XP_009126878.1  probable WRKY transcription factor 11 isoform X1

    UniProtKB/TrEMBL
    A0A3P5ZDB7
    Conserved Domains (2) summary
    smart00774
    Location:245 → 303
    WRKY; DNA binding domain
    pfam10533
    Location:207 → 243
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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