U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TT8 transcription factor TT8 [ Brassica rapa (field mustard) ]

Gene ID: 103838877, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
TT8
Gene description
transcription factor TT8
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TT8 in Genome Data Viewer
Location:
chromosome: A9
Exon count:
7
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (19592244..19597657, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (11311461..11315411)

Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103838879 Neighboring gene uncharacterized LOC103838878 Neighboring gene uncharacterized LOC117127962 Neighboring gene uncharacterized LOC117127961 Neighboring gene uncharacterized mitochondrial protein AtMg00810

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. UV-A light induces anthocyanin biosynthesis in a manner distinct from synergistic blue + UV-B light and UV-A/blue light responses in different parts of the hypocotyls in turnip seedlings. Wang Y, et al. Plant Cell Physiol, 2012 Aug. PMID 22706033
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor TT8
Names
bHLH DNA binding domain transcription factor BraA.TT8
bHLH transcription factor
transparent testa 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    19592244..19597657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009115326.3 → XP_009113574.1  transcription factor TT8

    See identical proteins and their annotated locations for XP_009113574.1

    UniProtKB/TrEMBL
    A0A397Y4Q6, G8Z8Z3
    Conserved Domains (2) summary
    smart00353
    Location:370 → 418
    HLH; helix loop helix domain
    pfam14215
    Location:21 → 201
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases