U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCARB1 scavenger receptor class B member 1 [ Serinus canaria (Common canary) ]

Gene ID: 103818193, updated on 12-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SCARB1
Gene description
scavenger receptor class B member 1
See related
EnsemblRapid:ENSSCAG00000010841
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SCARB1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 15 NC_066329.1 (12329269..12348959, complement)

Chromosome 15 - NC_066329.1Genomic Context describing neighboring genes Neighboring gene refilin A Neighboring gene nuclear receptor corepressor 2 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ubiquitin C

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_066329.1 Chromosome 15 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol import IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in recognition of apoptotic cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
scavenger receptor class B member 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066329.1 Reference serCan2020 Primary Assembly

    Range
    12329269..12348959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018916792.3 → XP_018772337.2  scavenger receptor class B member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9NAB3
    Related
    ENSSCAP00000014760.2, ENSSCAT00000016550.2
    Conserved Domains (1) summary
    pfam01130
    Location:33 → 460
    CD36; CD36 family

  2. XM_018916793.3 → XP_018772338.2  scavenger receptor class B member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9N7F8
    Related
    ENSSCAP00000014763.2, ENSSCAT00000016553.2
    Conserved Domains (1) summary
    pfam01130
    Location:33 → 460
    CD36; CD36 family

  3. XM_009092490.4 → XP_009090738.2  scavenger receptor class B member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C9N7F8
    Conserved Domains (1) summary
    pfam01130
    Location:33 → 460
    CD36; CD36 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.