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LOC103652667 scarecrow-like protein 34 [ Zea mays ]

Gene ID: 103652667, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103652667
Gene description
scarecrow-like protein 34
Locus tag
ZEAMMB73_Zm00001d048604
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G163427
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Genomic context

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See LOC103652667 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (1362041..1365133, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (1058026..1061116, complement)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100501842 Neighboring gene uncharacterized LOC103652666 Neighboring gene protein DETOXIFICATION 18-like Neighboring gene RHOMBOID-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    1362041..1365133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008679602.4 → XP_008677824.1  scarecrow-like protein 34

    See identical proteins and their annotated locations for XP_008677824.1

    UniProtKB/TrEMBL
    A0A3L6EVS9, K7U8D6
    Conserved Domains (1) summary
    pfam03514
    Location:384 → 756
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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