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LOC103651515 zinc finger CCCH domain-containing protein 7 [ Zea mays ]

Gene ID: 103651515, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103651515
Gene description
zinc finger CCCH domain-containing protein 7
Locus tag
ZEAMMB73_Zm00001d044260
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G306357
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Genomic context

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See LOC103651515 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (225033684..225047088)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (223156502..223169725)

Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene LIN1 protein Neighboring gene uncharacterized LOC100277492 Neighboring gene uncharacterized LOC109945347 Neighboring gene Protein indeterminate-domain 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
  2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 7
Names
C3H-type transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    225033684..225047088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035966495.1 → XP_035822388.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_035966496.1 → XP_035822389.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  3. XM_035966499.1 → XP_035822392.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  4. XM_035966497.1 → XP_035822390.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  5. XM_035966501.1 → XP_035822394.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  6. XM_035966500.1 → XP_035822393.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  7. XM_035966498.1 → XP_035822391.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  8. XM_035966502.1 → XP_035822395.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  9. XM_035966503.1 → XP_035822396.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  10. XM_035966492.1 → XP_035822385.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  11. XM_035966493.1 → XP_035822386.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  12. XM_035966494.1 → XP_035822387.1  zinc finger CCCH domain-containing protein 7

    UniProtKB/TrEMBL
    A0A096T535, K4JED0
    Conserved Domains (1) summary
    COG5084
    Location:435 → 514
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
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