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LOC103629573 protein SHI RELATED SEQUENCE 1 [ Zea mays ]

Gene ID: 103629573, updated on 14-Dec-2023

Summary

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Gene symbol
LOC103629573
Gene description
protein SHI RELATED SEQUENCE 1
Locus tag
ZEAMMB73_Zm00001d036426
Gene type
protein coding
RefSeq status
MODEL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G108798
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Genomic context

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See LOC103629573 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (94514398..94517115, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (87953938..87956716, complement)

Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103629569 Neighboring gene uncharacterized LOC103629572 Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-1 Neighboring gene Lysophospholipid acyltransferase LPEAT2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SHI RELATED SEQUENCE 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    94514398..94517115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008650651.4 → XP_008648873.1  protein SHI RELATED SEQUENCE 1

    See identical proteins and their annotated locations for XP_008648873.1

    UniProtKB/TrEMBL
    A0A1D6LN36, A0A3L6E6E4, A0A8J8XM72
    Conserved Domains (1) summary
    pfam05142
    Location:110 → 262
    DUF702; Domain of unknown function (DUF702)
Nucleotide Protein
Heading Accession and Version

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