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LOC103454894 transcription factor ICE1-like [ Malus domestica (apple) ]

Gene ID: 103454894, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103454894
Gene description
transcription factor ICE1-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
Also known as
ICE1; BHLH11
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Genomic context

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See LOC103454894 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 14 NC_041802.1 (24168335..24170933, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 14 NC_024252.1 (20259641..20262239, complement)

Chromosome 14 - NC_041802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103415124 Neighboring gene auxin response factor 2-like Neighboring gene keratin-associated protein 5-4-like Neighboring gene ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ICE1-like
Names
BHLH domain class transcription factor
bHLH transcriptional factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001294038.1 → NP_001280967.1  transcription factor ICE1-like

    See identical proteins and their annotated locations for NP_001280967.1

    Status: PROVISIONAL

    Source sequence(s)
    HM122452
    UniProtKB/TrEMBL
    B2BF97, D9ZIN8
    Conserved Domains (2) summary
    cd04873
    Location:460 → 520
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    smart00353
    Location:346 → 390
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041802.1 Reference ASM211411v1 Primary Assembly

    Range
    24168335..24170933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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