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HY5 transcription factor HY5 [ Malus domestica (apple) ]

Gene ID: 103450118, updated on 22-Oct-2023

Summary

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Gene symbol
HY5
Gene description
transcription factor HY5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See HY5 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 8 NC_041796.1 (14855626..14857936)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 12 NC_024250.1 (17013512..17015849, complement)

Chromosome 8 - NC_041796.1Genomic Context describing neighboring genes Neighboring gene UPF0481 protein At3g47200-like Neighboring gene protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 Neighboring gene uncharacterized LOC114826277 Neighboring gene cellulose synthase A catalytic subunit 1 [UDP-forming]

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MdHY5 positively regulates cold tolerance via CBF-dependent and CBF-independent pathways in apple. An JP, et al. J Plant Physiol, 2017 Nov. PMID 29031181
  2. MdWRKY11 Participates in Anthocyanin Accumulation in Red-Fleshed Apples by Affecting MYB Transcription Factors and the Photoresponse Factor MdHY5. Liu W, et al. J Agric Food Chem, 2019 Aug 14. PMID 31310107

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in red or far-red light signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to far red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to red light IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HY5
Names
bZIP transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001293823.1 → NP_001280752.1  transcription factor HY5

    See identical proteins and their annotated locations for NP_001280752.1

    Status: PROVISIONAL

    Source sequence(s)
    AB710143
    UniProtKB/TrEMBL
    L0MZN5
    Conserved Domains (1) summary
    cd14704
    Location:90 → 141
    bZIP_HY5-like; Basic leucine zipper (bZIP) domain of Plant Elongated/Long Hypocotyl5 (HY5)-like transcription factors and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041796.1 Reference ASM211411v1 Primary Assembly

    Range
    14855626..14857936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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