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LOC103445644 transcription factor bHLH155 [ Malus domestica (apple) ]

Gene ID: 103445644, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103445644
Gene description
transcription factor bHLH155
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103445644 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 10 NC_041798.1 (28098923..28104889)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 10 NC_024248.1 (18791090..18796044, complement)

Chromosome 10 - NC_041798.1Genomic Context describing neighboring genes Neighboring gene hyoscyamine 6-dioxygenase-like Neighboring gene autophagy-related protein 9 Neighboring gene WAT1-related protein At4g08300 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like Neighboring gene endoglucanase 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH155

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041798.1 Reference ASM211411v1 Primary Assembly

    Range
    28098923..28104889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008384658.3 → XP_008382880.1  transcription factor bHLH155

    See identical proteins and their annotated locations for XP_008382880.1

    UniProtKB/TrEMBL
    W0UTD7
    Conserved Domains (2) summary
    smart00353
    Location:568 → 609
    HLH; helix loop helix domain
    pfam14215
    Location:5 → 166
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein Strain
Heading Accession and Version

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