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H2AC5P H2A clustered histone 5, pseudogene [ Homo sapiens (human) ]

Gene ID: 10341, updated on 17-Sep-2024

Summary

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Official Symbol
H2AC5Pprovided by HGNC
Official Full Name
H2A clustered histone 5, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:4728
See related
AllianceGenome:HGNC:4728
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
H2AFFP; pH2A/f; HIST1H2APS5
Summary
Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]
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Genomic context

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See H2AC5P in Genome Data Viewer
Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26043900..26044550)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (25912064..25912714)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26044128..26044778)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:26033291-26033920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24183 Neighboring gene H2A clustered histone 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24184 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24185 Neighboring gene H2B clustered histone 3 Neighboring gene H3 clustered histone 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:26053365-26053538 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26053937-26054558 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:26055179-26055800 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24187 Neighboring gene H1.2 linker histone, cluster member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Markers

Other Names

  • H2A histone family, member F, pseudogene
  • histone 1, H2a, pseudogene 5
  • histone cluster 1 H2A pseudogene 5
  • histone cluster 1, H2a, pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029344.1 

    Range
    101..751
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26043900..26044550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    25912064..25912714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001227.1: Suppressed sequence

    Description
    NG_001227.1: This RefSeq was permanently suppressed because this gene is now included in the large histone family cluster on chromosome 6.
Nucleotide Protein
Heading Accession and Version

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