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hmgb2a high mobility group box 2a [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103384319, updated on 11-Mar-2024

Summary

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Gene symbol
hmgb2a
Gene description
high mobility group box 2a
See related
Ensembl:ENSCSEG00000015549
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
hmgb2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 9 NC_024315.1 (18460722..18463841, complement)

Chromosome 9 - NC_024315.1Genomic Context describing neighboring genes Neighboring gene 15-hydroxyprostaglandin dehydrogenase Neighboring gene WD repeat domain 17 Neighboring gene phosphomannomutase 2 Neighboring gene myotubularin related protein 7b Neighboring gene uncharacterized LOC103384312

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024315.1 Chromosome 9 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antibacterial and antiviral properties of tongue sole (Cynoglossus semilaevis) high mobility group B2 protein are largely independent on the acidic C-terminal domain. Long H, et al. Fish Shellfish Immunol, 2014 Mar. PMID 24468324

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B2
Names
high mobility group box 2
putative high mobility group B2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297586.1 → NP_001284515.1  high mobility group protein B2

    See identical proteins and their annotated locations for NP_001284515.1

    Status: PROVISIONAL

    Source sequence(s)
    KF573414
    UniProtKB/TrEMBL
    A0A3P8WD52, X2JGB1
    Related
    ENSCSEP00000024367.1, ENSCSET00000024697.1
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:6 → 77
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024315.1 Reference Cse_v1.0 Primary Assembly

    Range
    18460722..18463841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008317800.3 → XP_008316022.1  high mobility group protein B2 isoform X2

    See identical proteins and their annotated locations for XP_008316022.1

    UniProtKB/TrEMBL
    A0A3P8WD52
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:6 → 77
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  2. XM_017034891.2 → XP_016890380.1  high mobility group protein B2 isoform X2

    UniProtKB/TrEMBL
    A0A3P8WD52
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:6 → 77
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  3. XM_017034890.2 → XP_016890379.1  high mobility group protein B2 isoform X1

    UniProtKB/TrEMBL
    A0A3P8WD52

  4. XM_008317801.3 → XP_008316023.1  high mobility group protein B2 isoform X2

    See identical proteins and their annotated locations for XP_008316023.1

    UniProtKB/TrEMBL
    A0A3P8WD52
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    cl00082
    Location:6 → 77
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
Heading Accession and Version

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