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LOC102723878 uncharacterized LOC102723878 [ Homo sapiens (human) ]

Gene ID: 102723878, updated on 22-Oct-2024

Summary

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Gene symbol
LOC102723878
Gene description
uncharacterized LOC102723878
See related
Ensembl:ENSG00000236935
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.3), colon (RPKM 1.0) and 10 other tissues See more
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Genomic context

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See LOC102723878 in Genome Data Viewer
Location:
11q13.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (64325050..64340792, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (64315037..64330801, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (64092522..64108264, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3476 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4897 Neighboring gene estrogen related receptor alpha Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:64083535-64084050 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4898 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3477 Neighboring gene tRNA methyltransferase activator subunit 11-2 Neighboring gene peroxiredoxin 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:64092812-64092964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:64098506-64099028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4899 Neighboring gene CRISPRi-validated cis-regulatory element chr11.3041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3478 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3479 Neighboring gene Sharpr-MPRA regulatory region 2125 Neighboring gene coiled-coil domain containing 88B Neighboring gene microRNA 7155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:64126659-64127186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4902 Neighboring gene ribosomal protein S6 kinase A4 Neighboring gene microRNA 1237

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A novel sarcoidosis risk locus for Europeans on chromosome 11q13.1. Fischer A, et al. Am J Respir Crit Care Med, 2012 Nov 1. PMID 22837380
  2. Genome-wide association study in alopecia areata implicates both innate and adaptive immunity. Petukhova L, et al. Nature, 2010 Jul 1. PMID 20596022, Free PMC Article
  3. Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy. Liu H, et al. Nat Genet, 2015 Mar. PMID 25642632
  4. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Franke A, et al. Nat Genet, 2010 Dec. PMID 21102463, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A novel sarcoidosis risk locus for Europeans on chromosome 11q13.1.
EBI GWAS Catalog
Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.
EBI GWAS Catalog
Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.
EBI GWAS Catalog
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AP003774.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188518.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003774

  2. NR_188519.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003774

  3. NR_188520.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003774
    Related
    ENST00000690790.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    64325050..64340792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    64315037..64330801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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