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LINC01497 long intergenic non-protein coding RNA 1497 [ Homo sapiens (human) ]

Gene ID: 102723487, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01497provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1497provided by HGNC
Primary source
HGNC:HGNC:51163
See related
Ensembl:ENSG00000237560 AllianceGenome:HGNC:51163
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01497 in Genome Data Viewer
Location:
17q24.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (69961707..69983544)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (70839793..70861626)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (67957848..67979685)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 6 Neighboring gene uncharacterized LOC105371880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12655 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12656 Neighboring gene NANOG hESC enhancer GRCh37_chr17:67502478-67502979 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:67565237-67565738 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:67603079-67604278 Neighboring gene long intergenic non-protein coding RNA 1483 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:67757718-67758917 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:67797333-67798295 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:67798296-67799257 Neighboring gene MPRA-validated peak2972 silencer Neighboring gene MPRA-validated peak2973 silencer Neighboring gene uncharacterized LOC105371881 Neighboring gene uncharacterized LOC112267896 Neighboring gene uncharacterized LOC124904053 Neighboring gene long intergenic non-protein coding RNA 1028

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • AC004562.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110874.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC002539, AC004562
    Related
    ENST00000420427.3

  2. NR_110875.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at an internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC002539, AC004562
    Related
    ENST00000455460.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    69961707..69983544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    70839793..70861626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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