U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102723370 uncharacterized LOC102723370 [ Homo sapiens (human) ]

Gene ID: 102723370, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC102723370
Gene description
uncharacterized LOC102723370
See related
Ensembl:ENSG00000171714
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102723370 in Genome Data Viewer
Location:
11p15.1-p14.3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (21753206..22119899)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (21873848..22240486)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene neural EGFL like 1 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:21311115-21311614 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20242 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20249 Neighboring gene RNA, 5S ribosomal pseudogene 337 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20387 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20421 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20487 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20507 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20562 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:21831599-21832798 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:21882755-21883281 Neighboring gene uncharacterized LOC105376587 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:22042648-22043247 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20715 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:22086967-22087603 Neighboring gene uncharacterized LOC124902645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4530 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4531 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4532 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:22255998-22256992 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20787 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:22306158-22307357 Neighboring gene SLC17A6 divergent transcript Neighboring gene anoctamin 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans. Kwak SH, et al. Hum Mol Genet, 2014 Aug 15. PMID 24722205, Free PMC Article
  2. Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2. Pankratz N, et al. Ann Neurol, 2012 Mar. PMID 22451204, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.
EBI GWAS Catalog
Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    21753206..22119899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062619.1 RNA Sequence

  2. XR_931110.3 RNA Sequence

  3. XR_007062621.1 RNA Sequence

  4. XR_931109.3 RNA Sequence

    Related
    ENST00000683812.1

  5. XR_931111.3 RNA Sequence

  6. XR_007062618.1 RNA Sequence

  7. XR_007062617.1 RNA Sequence

  8. XR_007062620.1 RNA Sequence

  9. XR_931115.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    21873848..22240486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082084.1 RNA Sequence

  2. XR_007082079.1 RNA Sequence

  3. XR_007082086.1 RNA Sequence

  4. XR_007082078.1 RNA Sequence

  5. XR_007082080.1 RNA Sequence

  6. XR_007082082.1 RNA Sequence

  7. XR_007082081.1 RNA Sequence

  8. XR_007082085.1 RNA Sequence

  9. XR_007082083.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials