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LOC102722626 MADS-box transcription factor 2 [ Oryza brachyantha (malo sina) ]

Gene ID: 102722626, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102722626
Gene description
MADS-box transcription factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Also known as
PI2
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Genomic context

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See LOC102722626 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 1 NC_023163.2 (29491834..29494479, complement)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 1 NC_023163.1 (29743943..29746390, complement)

Chromosome 1 - NC_023163.2Genomic Context describing neighboring genes Neighboring gene amino acid permease 4-like Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene ubinuclein-1-like Neighboring gene gibberellin 20 oxidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MADS-box transcription factor 2
Names
PISTILLATA-like MADS-box transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023163.2 Reference ObraRS2 Primary Assembly

    Range
    29491834..29494479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006645070.3 → XP_006645133.1  MADS-box transcription factor 2

    UniProtKB/TrEMBL
    J3L6H2, M1EB37
    Conserved Domains (2) summary
    cd00265
    Location:2 → 80
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:83 → 163
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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