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LOC102722242 homeobox-leucine zipper protein HOX4 [ Oryza brachyantha (malo sina) ]

Gene ID: 102722242, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102722242
Gene description
homeobox-leucine zipper protein HOX4
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102722242 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 9 NC_023171.2 (11348224..11349831)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 9 NC_023171.1 (9857657..9859408)

Chromosome 9 - NC_023171.2Genomic Context describing neighboring genes Neighboring gene queuine tRNA-ribosyltransferase catalytic subunit 1-like Neighboring gene dicarboxylate transporter 2.1, chloroplastic-like Neighboring gene protein SCAI homolog Neighboring gene plant cysteine oxidase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HOX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023171.2 Reference ObraRS2 Primary Assembly

    Range
    11348224..11349831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015841389.2 → XP_015696875.1  homeobox-leucine zipper protein HOX4

    UniProtKB/TrEMBL
    J3MYC5
    Conserved Domains (2) summary
    pfam00046
    Location:49 → 102
    Homeobox; Homeobox domain
    pfam02183
    Location:104 → 145
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

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