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LOC102720990 scarecrow-like protein 3 [ Oryza brachyantha (malo sina) ]

Gene ID: 102720990, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102720990
Gene description
scarecrow-like protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102720990 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 5 NC_023167.2 (11537880..11539532)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 5 NC_023167.1 (11157040..11158692)

Chromosome 5 - NC_023167.2Genomic Context describing neighboring genes Neighboring gene acyl carrier protein 2, mitochondrial-like Neighboring gene scarecrow-like protein 3 Neighboring gene uncharacterized LOC121054559 Neighboring gene uncharacterized LOC107304308

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023167.2 Reference ObraRS2 Primary Assembly

    Range
    11537880..11539532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015837093.1 → XP_015692579.1  scarecrow-like protein 3

    UniProtKB/TrEMBL
    J3M6M0
    Conserved Domains (1) summary
    pfam03514
    Location:154 → 548
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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