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LOC102711960 transcription factor bHLH49-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102711960, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102711960
Gene description
transcription factor bHLH49-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102711960 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 3 NC_023165.2 (5992704..5996789, complement)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 3 NC_023165.1 (6147252..6151290, complement)

Chromosome 3 - NC_023165.2Genomic Context describing neighboring genes Neighboring gene squalene monooxygenase SE1-like Neighboring gene uncharacterized LOC102713528 Neighboring gene putative F-box protein At1g23770 Neighboring gene AP2-like ethylene-responsive transcription factor CRL5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH137-like; transcription factor bHLH49-like; transcription factor bHLH62-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023165.2 Reference ObraRS2 Primary Assembly

    Range
    5992704..5996789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015835041.2 → XP_015690527.1  transcription factor bHLH137-like isoform X1

    Conserved Domains (1) summary
    smart00353
    Location:139 → 188
    HLH; helix loop helix domain

  2. XM_015835043.2 → XP_015690529.1  transcription factor bHLH49-like isoform X3

    Conserved Domains (1) summary
    smart00353
    Location:131 → 180
    HLH; helix loop helix domain

  3. XM_015835042.2 → XP_015690528.1  transcription factor bHLH62-like isoform X2

    UniProtKB/TrEMBL
    J3LLN4
    Conserved Domains (1) summary
    smart00353
    Location:139 → 188
    HLH; helix loop helix domain

  4. XM_015835040.2 → XP_015690526.1  transcription factor bHLH137-like isoform X1

    Conserved Domains (1) summary
    smart00353
    Location:139 → 188
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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