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LOC102706649 protein CUP-SHAPED COTYLEDON 1-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102706649, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102706649
Gene description
protein CUP-SHAPED COTYLEDON 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102706649 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 4 NC_023166.2 (14261702..14264127)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 4 NC_023166.1 (13748241..13750667)

Chromosome 4 - NC_023166.2Genomic Context describing neighboring genes Neighboring gene dCTP pyrophosphatase 1-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene protein G1-like4 Neighboring gene uncharacterized LOC102707484

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CUP-SHAPED COTYLEDON 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023166.2 Reference ObraRS2 Primary Assembly

    Range
    14261702..14264127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006652453.3 → XP_006652516.1  protein CUP-SHAPED COTYLEDON 1-like

    UniProtKB/TrEMBL
    J3LZK4
    Conserved Domains (1) summary
    pfam02365
    Location:13 → 54
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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