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LOC102668194 transcription factor ALC [ Glycine max (soybean) ]

Gene ID: 102668194, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102668194
Gene description
transcription factor ALC
Locus tag
GLYMA_17G241000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC102668194 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (39744150..39747598)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (39641833..39645419)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 71 Neighboring gene probable E3 ubiquitin-protein ligase RHG1A Neighboring gene probable BOI-related E3 ubiquitin-protein ligase 3 Neighboring gene uncharacterized LOC106796730

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ALC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    39744150..39747598
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014769352.3 → XP_014624838.1  transcription factor ALC isoform X3

    UniProtKB/TrEMBL
    A0A0R0FQZ0
    Conserved Domains (1) summary
    cd11445
    Location:105 → 156
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  2. XM_006601222.4 → XP_006601285.1  transcription factor ALC isoform X2

    UniProtKB/TrEMBL
    A0A0R0FQU7
    Conserved Domains (1) summary
    cd11445
    Location:125 → 186
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  3. XM_006601221.4 → XP_006601284.1  transcription factor ALC isoform X1

    UniProtKB/TrEMBL
    K7MNP2
    Conserved Domains (1) summary
    cd11445
    Location:126 → 187
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
Nucleotide Protein
Heading Accession and Version

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