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LOC102667655 AT-rich interactive domain-containing protein 1 [ Glycine max (soybean) ]

Gene ID: 102667655, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102667655
Gene description
AT-rich interactive domain-containing protein 1
Locus tag
GLYMA_18G234900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC102667655 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (52614222..52620344, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (52338908..52345099, complement)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene ATP-dependent helicase BRM Neighboring gene ubiquitin-conjugating enzyme E2 4 Neighboring gene Yae1_N domain-containing protein Neighboring gene uncharacterized LOC100527413 Neighboring gene protein DETOXIFICATION 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    52614222..52620344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006602748.3 → XP_006602811.1  AT-rich interactive domain-containing protein 1

    See identical proteins and their annotated locations for XP_006602811.1

    UniProtKB/TrEMBL
    A0A0R0FCB4, K7MUC3
    Conserved Domains (2) summary
    cd00167
    Location:545 → 593
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cl02633
    Location:4 → 61
    ARID; ARID/BRIGHT DNA binding domain

  2. XM_026126711.2 → XP_025982496.1  AT-rich interactive domain-containing protein 1

    UniProtKB/TrEMBL
    A0A0R0FCB4, K7MUC3
    Conserved Domains (2) summary
    cd00167
    Location:545 → 593
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cl02633
    Location:4 → 61
    ARID; ARID/BRIGHT DNA binding domain

  3. XM_006602747.4 → XP_006602810.1  AT-rich interactive domain-containing protein 1

    See identical proteins and their annotated locations for XP_006602810.1

    UniProtKB/TrEMBL
    A0A0R0FCB4, K7MUC3
    Conserved Domains (2) summary
    cd00167
    Location:545 → 593
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cl02633
    Location:4 → 61
    ARID; ARID/BRIGHT DNA binding domain
Nucleotide Protein
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