U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102661979 uncharacterized LOC102661979 [ Glycine max (soybean) ]

Gene ID: 102661979, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC102661979
Gene description
uncharacterized LOC102661979
Locus tag
GLYMA_05G165700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102661979 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (35656930..35679798, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (35623002..35645746, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit alpha Neighboring gene disease resistance protein At4g27190 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD12 Neighboring gene uncharacterized LOC102662390

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC102661979
Names
intersectin-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    35656930..35679798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026128484.2 → XP_025984269.1  uncharacterized protein LOC102661979 isoform X2

    Conserved Domains (5) summary
    COG4886
    Location:712 → 860
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:735 → 759
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01582
    Location:14 → 166
    TIR; TIR domain
    pfam03004
    Location:1573 → 1705
    Transposase_24; Plant transposase (Ptta/En/Spm family)
    cl25732
    Location:1716 → 1828
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_026128483.2 → XP_025984268.1  uncharacterized protein LOC102661979 isoform X1

    Conserved Domains (5) summary
    COG4886
    Location:712 → 860
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:735 → 759
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01582
    Location:14 → 166
    TIR; TIR domain
    pfam03004
    Location:1575 → 1707
    Transposase_24; Plant transposase (Ptta/En/Spm family)
    cl25732
    Location:1718 → 1830
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases