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Gm4275 predicted gene 4275 [ Mus musculus (house mouse) ]

Gene ID: 102636907, updated on 2-Nov-2024

Summary

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Official Symbol
Gm4275provided by MGI
Official Full Name
predicted gene 4275provided by MGI
Primary source
MGI:MGI:3782452
See related
AllianceGenome:MGI:3782452
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dfa; 100043163
Summary
Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear speck. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 5.7) and frontal lobe adult (RPKM 0.3) See more
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Genomic context

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See Gm4275 in Genome Data Viewer
Location:
7; 7 F3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130121321..130132810)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (130519591..130530639)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33661 Neighboring gene predicted gene, 39097 Neighboring gene ring finger and WD repeat domain 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20244 Neighboring gene VISTA enhancer mm938 Neighboring gene STARR-seq mESC enhancer starr_20245 Neighboring gene arginyltransferase 1 Neighboring gene STARR-seq mESC enhancer starr_20247 Neighboring gene NSE4 homolog A, SMC5-SMC6 complex component Neighboring gene transforming, acidic coiled-coil containing protein 2 Neighboring gene STARR-seq mESC enhancer starr_20252 Neighboring gene predicted gene, 34365

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mouse Dfa is a repressor of TATA-box promoters and interacts with the Abt1 activator of basal transcription. Brower CS, et al. J Biol Chem, 2010 May 28. PMID 20356838, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Dfa(A) acts as a repressor of TATA-box transcriptional promoters
    Title: Mouse Dfa is a repressor of TATA-box promoters and interacts with the Abt1 activator of basal transcription.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nuclear speck IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative uncharacterized protein ZNRD1-AS1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    130121321..130132810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508430.5 → XP_006508493.1  putative uncharacterized protein ZNRD1-AS1

    Conserved Domains (1) summary
    pfam17658
    Location:72 → 208
    DUF5520; Family of unknown function (DUF5520)

RNA

  1. XR_869987.2 RNA Sequence

  2. XR_869988.4 RNA Sequence

  3. XR_869989.4 RNA Sequence

  4. XR_004934335.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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