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LOC102629393 ethylene-responsive transcription factor-like protein At4g13040 [ Citrus sinensis (sweet orange) ]

Gene ID: 102629393, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102629393
Gene description
ethylene-responsive transcription factor-like protein At4g13040
Locus tag
KPL70_009139
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102629393 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 3 NC_068558.1 (41473618..41479933)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 5 NC_023050.1 (30206923..30213417)

Chromosome 3 - NC_068558.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102628840 Neighboring gene wound-induced basic protein Neighboring gene uncharacterized LOC102630447 Neighboring gene FHA domain-containing protein FHA2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor-like protein At4g13040
Names
AP2/ERF domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068558.1 Reference DVS_A1.0 Primary Assembly

    Range
    41473618..41479933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006479173.4 → XP_006479236.1  ethylene-responsive transcription factor-like protein At4g13040 isoform X3

    See identical proteins and their annotated locations for XP_006479236.1

    UniProtKB/TrEMBL
    A0A067FF44
    Conserved Domains (1) summary
    cl00033
    Location:123 → 178
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  2. XM_006479174.4 → XP_006479237.1  ethylene-responsive transcription factor-like protein At4g13040 isoform X3

    See identical proteins and their annotated locations for XP_006479237.1

    UniProtKB/TrEMBL
    A0A067FF44
    Conserved Domains (1) summary
    cl00033
    Location:123 → 178
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  3. XM_006479172.3 → XP_006479235.1  ethylene-responsive transcription factor-like protein At4g13040 isoform X3

    See identical proteins and their annotated locations for XP_006479235.1

    UniProtKB/TrEMBL
    A0A067FF44
    Conserved Domains (1) summary
    cl00033
    Location:123 → 178
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

  4. XM_025098678.2 → XP_024954446.2  ethylene-responsive transcription factor-like protein At4g13040 isoform X1

  5. XM_052438680.1 → XP_052294640.1  ethylene-responsive transcription factor-like protein At4g13040 isoform X2

Nucleotide Protein
Heading Accession and Version

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