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LOC102614544 transcription factor HBP-1b(c38) [ Citrus sinensis (sweet orange) ]

Gene ID: 102614544, updated on 6-Jun-2024

Summary

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Gene symbol
LOC102614544
Gene description
transcription factor HBP-1b(c38)
Locus tag
KPL70_025907
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102614544 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 9 NC_068564.1 (13664636..13672162)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 5 NC_023050.1 (8015317..8022686, complement)

Chromosome 9 - NC_068564.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC127899877 Neighboring gene DNA gyrase subunit B, chloroplastic/mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HBP-1b(c38)
Names
transcription factor TGAL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068564.1 Reference DVS_A1.0 Primary Assembly

    Range
    13664636..13672162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052433537.1 → XP_052289497.1  transcription factor HBP-1b(c38)

    UniProtKB/TrEMBL
    A0A067DTM1, A0A067E0Z9

  2. XM_006477431.4 → XP_006477494.1  transcription factor HBP-1b(c38)

    See identical proteins and their annotated locations for XP_006477494.1

    UniProtKB/TrEMBL
    A0A067DTM1, A0A067E0Z9
    Conserved Domains (2) summary
    cd14708
    Location:125 → 177
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:207 → 283
    DOG1; Seed dormancy control

  3. XM_052433536.1 → XP_052289496.1  transcription factor HBP-1b(c38)

    UniProtKB/TrEMBL
    A0A067DTM1, A0A067E0Z9
Nucleotide Protein
Heading Accession and Version

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