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LOC102612367 homeobox protein LUMINIDEPENDENS [ Citrus sinensis (sweet orange) ]

Gene ID: 102612367, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102612367
Gene description
homeobox protein LUMINIDEPENDENS
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102612367 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 3 NC_068558.1 (44981530..44989255)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 5 NC_023050.1 (33908762..33916853)

Chromosome 3 - NC_068558.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene cullin-1 Neighboring gene metal tolerance protein C1 Neighboring gene small nucleolar RNA Z155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vegetative to reproductive phase transition of meristem IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein LUMINIDEPENDENS

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068558.1 Reference DVS_A1.0 Primary Assembly

    Range
    44981530..44989255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025099435.2 → XP_024955203.1  homeobox protein LUMINIDEPENDENS

    UniProtKB/TrEMBL
    A0A067HH03
    Conserved Domains (1) summary
    cd00086
    Location:69 → 125
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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