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LOC102607505 common plant regulatory factor 1 [ Citrus sinensis (sweet orange) ]

Gene ID: 102607505, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102607505
Gene description
common plant regulatory factor 1
Locus tag
KPL70_010263
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102607505 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 3 NC_068558.1 (49720892..49725906, complement)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) Unplaced Scaffold NW_006257073.1 (1807383..1812190)

Chromosome 3 - NC_068558.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 13 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene GDSL esterase/lipase At4g01130 Neighboring gene uncharacterized LOC127900857

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
common plant regulatory factor 1
Names
G-box-binding factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068558.1 Reference DVS_A1.0 Primary Assembly

    Range
    49720892..49725906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025092511.2 → XP_024948279.1  common plant regulatory factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A067HEJ5, A0A067HEU0
    Conserved Domains (5) summary
    smart00338
    Location:243 → 307
    BRLZ; basic region leucin zipper
    cd14702
    Location:248 → 296
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam06005
    Location:271 → 345
    ZapB; Cell division protein ZapB
    pfam07777
    Location:1 → 94
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:127 → 224
    MFMR_assoc; Disordered region downstream of MFMR

  2. XM_006491163.4 → XP_006491226.1  common plant regulatory factor 1 isoform X2

    See identical proteins and their annotated locations for XP_006491226.1

    UniProtKB/TrEMBL
    A0A067HEJ5
    Conserved Domains (5) summary
    smart00338
    Location:264 → 328
    BRLZ; basic region leucin zipper
    cd14702
    Location:269 → 317
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam06005
    Location:292 → 366
    DUF904; Protein of unknown function (DUF904)
    pfam07777
    Location:1 → 94
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:99 → 245
    MFMR_assoc; Disordered region downstream of MFMR

  3. XM_006491160.4 → XP_006491223.1  common plant regulatory factor 1 isoform X1

    See identical proteins and their annotated locations for XP_006491223.1

    UniProtKB/TrEMBL
    A0A067H642, A0A067HEJ5
    Conserved Domains (5) summary
    smart00338
    Location:278 → 342
    BRLZ; basic region leucin zipper
    cd14702
    Location:283 → 331
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam06005
    Location:306 → 380
    DUF904; Protein of unknown function (DUF904)
    pfam07777
    Location:1 → 94
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:113 → 259
    MFMR_assoc; Disordered region downstream of MFMR

  4. XM_006491161.4 → XP_006491224.1  common plant regulatory factor 1 isoform X1

    See identical proteins and their annotated locations for XP_006491224.1

    UniProtKB/TrEMBL
    A0A067H642, A0A067HEJ5
    Conserved Domains (5) summary
    smart00338
    Location:278 → 342
    BRLZ; basic region leucin zipper
    cd14702
    Location:283 → 331
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam06005
    Location:306 → 380
    DUF904; Protein of unknown function (DUF904)
    pfam07777
    Location:1 → 94
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:113 → 259
    MFMR_assoc; Disordered region downstream of MFMR
Nucleotide Protein
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