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LOC102598221 transcription factor RF2a [ Solanum tuberosum (potato) ]

Gene ID: 102598221, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102598221
Gene description
transcription factor RF2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102598221 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239226.1 (50522..53801)

NW_006239226.1Genomic Context describing neighboring genes Neighboring gene polyprenol reductase 2 Neighboring gene protein BASIC PENTACYSTEINE4-like Neighboring gene tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like Neighboring gene clathrin interactor 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239226.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor RF2a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239226.1 Reference SolTub_3.0 Primary Assembly

    Range
    50522..53801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006359546.2 → XP_006359608.1  transcription factor RF2a

    UniProtKB/TrEMBL
    M0ZN09
    Conserved Domains (3) summary
    PHA03160
    Location:69 → 148
    PHA03160; hypothetical protein; Provisional
    cd14703
    Location:422 → 471
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    pfam04871
    Location:445 → 525
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
Nucleotide Protein
Heading Accession and Version

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