U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102596245 protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [ Solanum tuberosum (potato) ]

Gene ID: 102596245, updated on 2-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC102596245
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102596245 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239083.1 (390697..393141)

NW_006239083.1Genomic Context describing neighboring genes Neighboring gene beta-amyrin 28-oxidase-like Neighboring gene beta-amyrin 28-oxidase-like Neighboring gene FHA domain-containing protein PS1-like Neighboring gene uncharacterized LOC102597111

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006239083.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239083.1 Reference SolTub_3.0 Primary Assembly

    Range
    390697..393141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006353568.2 → XP_006353630.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like

    See identical proteins and their annotated locations for XP_006353630.1

    UniProtKB/TrEMBL
    M1CGN8
    Conserved Domains (3) summary
    COG0535
    Location:120 → 297
    SkfB; Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]
    sd00017
    Location:184 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:182 → 204
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_006353569.2 → XP_006353631.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like

    See identical proteins and their annotated locations for XP_006353631.1

    UniProtKB/TrEMBL
    M1CGN8
    Conserved Domains (3) summary
    COG0535
    Location:120 → 297
    SkfB; Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]
    sd00017
    Location:184 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:182 → 204
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_015311412.1 → XP_015166898.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like

    UniProtKB/TrEMBL
    M1CGN8
    Conserved Domains (3) summary
    COG0535
    Location:120 → 297
    SkfB; Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]
    sd00017
    Location:184 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:182 → 204
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases